

Survival Analysis in R for Public Health
- Offered byCoursera
- Public/Government Institute
Survival Analysis in R for Public Health at Coursera Overview
Duration | 11 hours |
Total fee | Free |
Mode of learning | Online |
Difficulty level | Intermediate |
Official Website | Explore Free Course |
Credential | Certificate |
Survival Analysis in R for Public Health at Coursera Highlights
- Shareable Certificate Earn a Certificate upon completion
- 100% online Start instantly and learn at your own schedule.
- Course 4 of 4 in the Statistical Analysis with R for Public Health Specialization
- Flexible deadlines Reset deadlines in accordance to your schedule.
- Intermediate Level We advise that you first take the previous courses in the series, particularly Introduction to Statistics, though this is not essential.
- Approx. 11 hours to complete
- English Subtitles: French, Portuguese (European), Russian, English, Spanish
Survival Analysis in R for Public Health at Coursera Course details
- Welcome to Survival Analysis in R for Public Health!
- The three earlier courses in this series covered statistical thinking, correlation, linear regression and logistic regression. This one will show you how to run survival ? or ?time to event? ? analysis, explaining what?s meant by familiar-sounding but deceptive terms like hazard and censoring, which have specific meanings in this context. Using the popular and completely free software R, you?ll learn how to take a data set from scratch, import it into R, run essential descriptive analyses to get to know the data?s features and quirks, and progress from Kaplan-Meier plots through to multiple Cox regression. You?ll use data simulated from real, messy patient-level data for patients admitted to hospital with heart failure and learn how to explore which factors predict their subsequent mortality. You?ll learn how to test model assumptions and fit to the data and some simple tricks to get round common problems that real public health data have. There will be mini-quizzes on the videos and the R exercises with feedback along the way to check your understanding.
- Prerequisites
- Some formulae are given to aid understanding, but this is not one of those courses where you need a mathematics degree to follow it. You will need basic numeracy (for example, we will not use calculus) and familiarity with graphical and tabular ways of presenting results. The three previous courses in the series explained concepts such as hypothesis testing, p values, confidence intervals, correlation and regression and showed how to install R and run basic commands. In this course, we will recap all these core ideas in brief, but if you are unfamiliar with them, then you may prefer to take the first course in particular, Statistical Thinking in Public Health, and perhaps also the second, on linear regression, before embarking on this one.
Survival Analysis in R for Public Health at Coursera Curriculum
The Kaplan-Meier Plot
Welcome to Course
What is Survival Analysis?
The KM plot and Log-rank test
What is Heart Failure and How to run a KM plot in R
About Imperial College & the team
How to be successful in this course
Grading policy
Data set and glossary
Additional Readings
Life tables
Feedback: Life Tables
The Course Data Set
Feedback: Running a KM plot and log-rank test
Practice in R: Run another KM Plot and log-rank test
Feedback: Running another KM plot and log-rank test
Survival Analysis Variables
Life tables
Practice in R: Running a KM plot and log-rank test
The Cox Model
Intro to Cox Model
How to run Simple Cox model in R
Introduction to Missing Data
Hazard Function and Risk Set
Practice in R: Simple Cox Model
Feedback: Simple Cox Model
Further Reading
Hazard function and Ratio
Simple Cox Model
The Multiple Cox Model
Interpreting the output from multiple Cox model
Introduction to Running Descriptives
Practice in R: Getting to know your data
Feedback: Getting to know your data
How to run multiple Cox model in R
Introduction to Non-convergence
Practice: Fixing the problem of non-convergence
Feedback on fixing a non-converging model
Multiple Cox Model
The Proportionality Assumption
How to assess Cox model fit
Cox proportional hazards assumption
Summary of Course
Checking the proportionality assumption
Feedback on Practice Quiz
What to do if the proportionality assumption is not met
How to choose predictors for a regression model
Practice in R: Running a Multiple Cox Model
Results of the exercise on model selection and backwards elimination
Final Code
Assessing the proportionality assumption in practice
Testing the proportionality assumption with another variable
End-of-Module Assessment
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