Coursera
Coursera Logo

Survival Analysis in R for Public Health 

  • Offered byCoursera
  • Public/Government Institute

Survival Analysis in R for Public Health
 at 
Coursera 
Overview

Duration

11 hours

Total fee

Free

Mode of learning

Online

Difficulty level

Intermediate

Official Website

Explore Free Course External Link Icon

Credential

Certificate

Survival Analysis in R for Public Health
Table of content
Accordion Icon V3

Survival Analysis in R for Public Health
 at 
Coursera 
Highlights

  • Shareable Certificate Earn a Certificate upon completion
  • 100% online Start instantly and learn at your own schedule.
  • Course 4 of 4 in the Statistical Analysis with R for Public Health Specialization
  • Flexible deadlines Reset deadlines in accordance to your schedule.
  • Intermediate Level We advise that you first take the previous courses in the series, particularly Introduction to Statistics, though this is not essential.
  • Approx. 11 hours to complete
  • English Subtitles: French, Portuguese (European), Russian, English, Spanish
Read more
Details Icon

Survival Analysis in R for Public Health
 at 
Coursera 
Course details

More about this course
  • Welcome to Survival Analysis in R for Public Health!
  • The three earlier courses in this series covered statistical thinking, correlation, linear regression and logistic regression. This one will show you how to run survival ? or ?time to event? ? analysis, explaining what?s meant by familiar-sounding but deceptive terms like hazard and censoring, which have specific meanings in this context. Using the popular and completely free software R, you?ll learn how to take a data set from scratch, import it into R, run essential descriptive analyses to get to know the data?s features and quirks, and progress from Kaplan-Meier plots through to multiple Cox regression. You?ll use data simulated from real, messy patient-level data for patients admitted to hospital with heart failure and learn how to explore which factors predict their subsequent mortality. You?ll learn how to test model assumptions and fit to the data and some simple tricks to get round common problems that real public health data have. There will be mini-quizzes on the videos and the R exercises with feedback along the way to check your understanding.
  • Prerequisites
  • Some formulae are given to aid understanding, but this is not one of those courses where you need a mathematics degree to follow it. You will need basic numeracy (for example, we will not use calculus) and familiarity with graphical and tabular ways of presenting results. The three previous courses in the series explained concepts such as hypothesis testing, p values, confidence intervals, correlation and regression and showed how to install R and run basic commands. In this course, we will recap all these core ideas in brief, but if you are unfamiliar with them, then you may prefer to take the first course in particular, Statistical Thinking in Public Health, and perhaps also the second, on linear regression, before embarking on this one.
Read more

Survival Analysis in R for Public Health
 at 
Coursera 
Curriculum

The Kaplan-Meier Plot

Welcome to Course

What is Survival Analysis?

The KM plot and Log-rank test

What is Heart Failure and How to run a KM plot in R

About Imperial College & the team

How to be successful in this course

Grading policy

Data set and glossary

Additional Readings

Life tables

Feedback: Life Tables

The Course Data Set

Feedback: Running a KM plot and log-rank test

Practice in R: Run another KM Plot and log-rank test

Feedback: Running another KM plot and log-rank test

Survival Analysis Variables

Life tables

Practice in R: Running a KM plot and log-rank test

The Cox Model

Intro to Cox Model

How to run Simple Cox model in R

Introduction to Missing Data

Hazard Function and Risk Set

Practice in R: Simple Cox Model

Feedback: Simple Cox Model

Further Reading

Hazard function and Ratio

Simple Cox Model

The Multiple Cox Model

Interpreting the output from multiple Cox model

Introduction to Running Descriptives

Practice in R: Getting to know your data

Feedback: Getting to know your data

How to run multiple Cox model in R

Introduction to Non-convergence

Practice: Fixing the problem of non-convergence

Feedback on fixing a non-converging model

Multiple Cox Model

The Proportionality Assumption

How to assess Cox model fit

Cox proportional hazards assumption

Summary of Course

Checking the proportionality assumption

Feedback on Practice Quiz

What to do if the proportionality assumption is not met

How to choose predictors for a regression model

Practice in R: Running a Multiple Cox Model

Results of the exercise on model selection and backwards elimination

Final Code

Assessing the proportionality assumption in practice

Testing the proportionality assumption with another variable

End-of-Module Assessment

Other courses offered by Coursera

– / –
3 months
Beginner
– / –
20 hours
Beginner
– / –
2 months
Beginner
– / –
3 months
Beginner
View Other 6716 CoursesRight Arrow Icon
qna

Survival Analysis in R for Public Health
 at 
Coursera 

Student Forum

chatAnything you would want to ask experts?
Write here...