Bioinformatics with Python 

Introduction and Course plan

What is Bioinformatics?

What is a DNA?

What is Protein Synthesis?

Overview of Bioinformatics Databases

Handling Sequences with BioPython

BioPython - Protein Synthesis

BioPython - DNA Composition - GC Content,AT Content and Frequency

BioPython - Sequence Alignment

BioPython - Difference Between Sequence Similarity and Sequence Identity

BioPython - Checking for Similarity Using Distance

BioPython - Checking for Similarity Using DotPlot

BioPython - Working with Biological Data File Formats - FASTA,GENBANK,etc

BioPython - Working with 3D Structures

BioPython - Visualizing 3D Structures

BioPython - Using Nglview For 3D Structures

BioPython - Using Pytraj For 3D Structure

BioPython - BLAST

Section Materials - For BioPython

Real Example with BioPython - Sequence Analysis of Covid 19 DNA

Biotite - Introduction, Handling Sequences and Protein Synthesis

Biotite -Sequence Alignments

Biotite - Working with Files

Biotite - Reading Data From Bioinformatic Databases

Biotite - Fetching PDB Files from Protein Data Bank

Biotite - Fetching and Querying Multiple PDB Files

Biotite - Working 3D Structures of Protein

Biotite - Quick Overview of Phylogenetics with Biotite

Biotite - Applications Subpackage

Real Example with Biotite - Comparing Coronavirus and MERS viral genome

Scikit-Bio- Handling DNA,RNA and Protein Sequence

Scikit-Bio - Protein Synthesis

Scikit-Bio - DNA Composition - Checking for GC Content and AT Content

Scikit-Bio - Checking for Similarity using Hamming Distance and Kmer-Distance

Scikit-Bio - Kmers and Kmers Frequency

Scikit-Bio - Sequence Alignment - Global and Local Alignments

Scikit-Bio - Working with FASTA and GenBank File Formats

Scikit-Bio - Phylogenetics - A Simple Overview using Newick Format

Bioinformatics using Custom Functions in Python

Building A BioInformatics Package with Python -From Scratch

Bioinformatics with NeatBio

Building A Simple BioInformatics App with Streamlit

Bioinformatics with Julia