Johns Hopkins University - Bioconductor for Genomic Data Science
- Offered byCoursera
- Public/Government Institute
Bioconductor for Genomic Data Science at Coursera Overview
Duration | 9 hours |
Total fee | Free |
Mode of learning | Online |
Official Website | Explore Free Course  |
Credential | Certificate |
- Overview
- Highlights
- Course Details
- Curriculum
Bioconductor for Genomic Data Science at Coursera Highlights
- This Course Plus the Full Specialization.
- Shareable Certificates.
- Graded Programming Assignments.
Bioconductor for Genomic Data Science at Coursera Course details
- Learn to use tools from the Bioconductor project to perform analysis of genomic data. This is the fifth course in the Genomic Big Data Specialization from Johns Hopkins University.
Bioconductor for Genomic Data Science at Coursera Curriculum
Week One
Installing R on Windows
Installing R on A Mac
Installing R Studio on a Mac
What is Bioconductor
Installing Bioconductor
The Bioconductor Website
Useful Online Resources
R Base Types
GRanges - Overview
IRanges - Basic Usage
GenomicRanges - GRanges
GenomicRanges - Basic GRanges Usage
GenomicRanges - seqinfo
AnnotationHub
Usecase: AnnotationHub and GRanges, part 1
Usecase: AnnotationHub and GRanges, part 2
Welcome
Syllabus
Pre Course Survey
Quiz 1
Week Two
Biostrings
BSgenome
Biostrings - Matching
BSgenome - Views
GenomicRanges - Rle
GenomicRanges - Lists
GenomicFeatures
rtracklayer - Data Import
Quiz 2
Week Three
Basic Data Types
Annotation Overview
ExpressionSet Overview
ExpressionSet
SummarizedExperiment
GEOquery
biomaRt
R S4 Classes
R S4 Methods
Quiz 3
Week Four
Getting data into Bioconductor
Short Read
Rsamtools
oligo
limma
minfi
Count-based RNA-seq analysis
Post Course Survey
Quiz 4
Other courses offered by Coursera
Student Forum
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