M.Sc Biotechnology

D Y Patil is better as compared to Amity. However, both are not good in terms of quality and reputation. Following are the best colleges to be thought of:
Rajiv Gandhi Center for Biotechnology, Trivandrum
School of Life Sciences, University of Hyderabad
National Dairy Research Institute, Karnal
Bioinformatics Centre, University of Pune
Unfortunately, Mumbai does not have any top ranking institute for biotechnology.

You can refer this link:
http://www.google.co.in/url?q=http://archives.biotecnika.org/biotech-colleges/m.sc-biotech-colleges-india.html&sa=U&ved=0ahUKEwjG8anZyNPTAhUCQyYKHbS4CgoQFggZMAI&sig2=3X0cPJuqdE2_e08zcz8BWg&usg=AFQjCNEwdY7OM7MahI_smIvI2VnVzB8tig
All the best!

It depends where you want to go. MBA will.be helpful.more in administration, marketing kind of job and biotechnology more in technical.side such as production, quality control, RandD, etc.

If you want to remain technologist and want to pursue career in Biotechnology then MSc Biotechnology is the career option for you. But if you want to become generalist then MBA is right option for you.